Advances in microbial-mediated numerical modeling of biogeochemical processes in groundwater

DAI Heng; WU Huixian; REN Wanli; ZHANG Yiyu; WEN Zhang; YUAN Songhu

doi:10.16030/j.cnki.issn.1000-3665.202412026

2025 Vol. 52, No. 3

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DAI Heng, WU Huixian, REN Wanli, ZHANG Yiyu, WEN Zhang, YUAN Songhu. Advances in microbial-mediated numerical modeling of biogeochemical processes in groundwater[J]. Hydrogeology & Engineering Geology, 2025, 52(3): 14-27. doi: 10.16030/j.cnki.issn.1000-3665.202412026

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DAI Heng, WU Huixian, REN Wanli, ZHANG Yiyu, WEN Zhang, YUAN Songhu. Advances in microbial-mediated numerical modeling of biogeochemical processes in groundwater[J]. Hydrogeology & Engineering Geology, 2025, 52(3): 14-27. doi: 10.16030/j.cnki.issn.1000-3665.202412026

Advances in microbial-mediated numerical modeling of biogeochemical processes in groundwater

1.
State Key Laboratory of Geomicrobiology and Environmental Changes, China University of Geosciences (Wuhan), Wuhan, Hubei　430074, China
2.
Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, China University of Geosciences (Wuhan), Wuhan, Hubei　430078, China

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Author Bio: 戴恒，中国地质大学（武汉）微生物与环境全国重点实验室研究员，博士生导师，国家优秀青年科学基金获得者。主要从事水文地质领域地下水模拟、不确定性分析、人工智能方法应用等方面研究。在Water Resources Research等知名期刊上发表SCI论文40余篇，已主持国家自然科学基金3项，作为项目骨干参与国家重点研发计划2项。现担任水文与地球科学领域重要SCI期刊Journal of Hydrology与Hydrology and Earth System Sciences（HESS）副主编，水利工程领域SCI期刊Journal of Hydrologic Engineering副主编，并担任国际水文科学协会中国委员会地下水分委员会与国际水资源学会中国委员会地下水专委会委员

Received Date: 11 December 2024

Revised Date: 27 March 2025

Publish Date: 15 May 2025

Abstract

Abstract

Groundwater contamination is a global environmental issue that seriously threatens human health and ecological environment. As an essential component of groundwater ecosystems, microorganisms are involved in a series of biogeochemical processes through their metabolic reactions, which control the transformation and transport of contaminants. Numerical simulation of the contaminants transport and transformation is an effective method to quantitatively describe and predict their behaviors. Understanding and handling the modeling of microbial metabolic processes can significantly improve the accuracy of simulation and prediction of contaminants behaviors in groundwater. Here, this review systematically summarizes the development process of microbial metabolic activities according to the development timeline and application scales, focusing on the advancement of next-generation gene sequencing technology to promote numerical simulation research. Meanwhile, this review analyzes how to construct microbial metabolism models to quantitatively describe the biogeochemical processes they are involved in, and summarizes the commonly used microbial information databases and simulation softwares. It is pointed out that the current application of microbial metabolism modeling still faces many challenges, including verification difficulty, low parameter applicability, data acquisition difficulty, and high computational demands. Future research should further explore microbial metabolic mechanisms, optimize microbial metabolic modeling methods, and improve parameters and empirical equations under different demands, to enhance the accuracy and applicability of models, as well as to solve the issues of microbial-related data processing and computational precision and efficiency in model establishment.
- groundwater contamination /
- numerical simulation /
- microbial metabolism modeling /
- biogeochemical process /
- model-data integration

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References

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